Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK328.5a
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Query: ZK328.5a CE28183 locus:npp-10 nucleoporin status:Partially_confirmed TR:Q95PX4 protein_id:AAK68618.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Nucleoporin2 Nucleoporin autopeptidase 142.4 3.3e-42 1
Mn_catalase Manganese containing catalase 1.2 7.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Mn_catalase 1/1 689 723 .. 280 314 .] 1.2 7.3
Nucleoporin2 1/1 779 903 .. 47 179 .. 142.4 3.3e-42
Alignments of top-scoring domains:
Mn_catalase: domain 1 of 1, from 689 to 723: score 1.2, E = 7.3
*->eevLqrmaDrtepaPglshntglelakrlpkkkaf<-*
+ v+qr Dr + P l +t + +l + +a+
ZK328.5a 689 QAVIQRHNDRNRDPPSLNLDTTCDEHTGLEPVSAA 723
Nucleoporin2: domain 1 of 1, from 779 to 903: score 142.4, E = 3.3e-42
*->siGRkGYGsiaFekDVdLtafeKskledlfGKiVvfRerKevvVYpd
++GR YGs++ + V+L l++ iVvf + ev VYp
ZK328.5a 779 TVGRSSYGSVYWPGRVELKDVA---LDE----IVVF-RHREVTVYPN 817
easkPpvGeGLNvpAiiTLekvwPvdkktrkpiKdpdkladinyidrlkk
e k p G LN+pA++TLe vw +dkkt+k + d kl +i ++l++
ZK328.5a 818 EEEKAPEGQELNRPAEVTLERVWYTDKKTKKEVRDVVKLSEIGWREHLER 867
lrrikdaeFieYnPedGkWvFKVsHFSkYGLldeee<-*
+a F++++ e+G+WvF V HFSkYGL d++e
ZK328.5a 868 QTIRMGAAFKDFRAETGSWVFRVDHFSKYGLADDDE 903