Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/ZK40.1
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Query:  ZK40.1  CE28186    status:Partially_confirmed TR:Q23087 protein_id:AAB04844.2

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Acyltransferase Acyltransferase                         159.7    4.8e-44   1
HGWP            HGWP repeat                               5.2        4.4   1
CO_dh           CO dehydrogenase beta subunit/acetyl-     3.6        5.3   1
GASA            Gibberellin regulated protein             0.5        7.6   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
HGWP              1/1      61    82 ..    10    33 .]     5.2      4.4
GASA              1/1     183   189 ..   103   109 .]     0.5      7.6
Acyltransferase   1/1      80   225 ..     1   167 []   159.7  4.8e-44
CO_dh             1/1     287   303 ..   164   180 .]     3.6      5.3

Alignments of top-scoring domains:
HGWP: domain 1 of 1, from 61 to 82: score 5.2, E = 4.4
                   *->rLhGcWpimPpllGvyrlvftagl<-*
                      rL G W imP  l  y  +f a +
      ZK40.1    61    RLVGIWVIMPGALCNY--IFGANI    82

GASA: domain 1 of 1, from 183 to 189: score 0.5, E = 7.6
                   *->gGgpKCP<-*
                      +G+ KCP
      ZK40.1   183    EGTDKCP    189

Acyltransferase: domain 1 of 1, from 80 to 225: score 159.7, E = 4.8e-44
                   *->vevrglenlpe.kgpaiivsNHqSylDplvlslllykrgpwprplvf
                       ++r +++++ +++pa+i++NH+++lD+l+++ +lyk++pw++ + +
      ZK40.1    80    ANIRIKGDFINhEEPALIIMNHRTRLDWLFFWNALYKMDPWLCTTEK 126

                   iakkellggisvPllGwlmrlagaifidRnnhkdk.pllnel.yl.g.er
                   i+ k +l  ++vP++Gw+m+ a +if+dR++++dk++l+n+l+y+ ++e+
      ZK40.1   127 ISLKGML--KYVPGAGWAMQAASYIFLDRSFDTDKtKLDNILnYYaEtEY 174

                   .yqriwkrkaygaslleyavelLrkGelvviFPEGTRsrgkdetrygell
                   +yq                         +++FPEGT  ++ ++t++++++
      ZK40.1   175 kYQ-------------------------LLLFPEGTDKCP-KATERSRIH 198

                   pfKkGafrlAaellph.tgagvpIvPv<-*
                   + KkG++++ ++l+p+ tg+ + ++ +
      ZK40.1   199 SEKKGLVHYQYVLHPRvTGFVHIVQAM    225

CO_dh: domain 1 of 1, from 287 to 303: score 3.6, E = 5.3
                   *->NlskeeeeylemLeEml<-*
                      Nl+  +ee+l+ ++Em
      ZK40.1   287    NLWRNKEEKLKRFYEMP    303



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