hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5a/seq/ZK520.4a
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Query:  ZK520.4a  CE25691  locus:cul-2 Cullin family (2 domains) status:Partially_confirmed TR:Q9NA22 protein_id:CAB70188.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Cullin         Cullin family                           1186.1          0   2
ribonuc_red_sm Ribonucleotide reductase, small chain      6.1       0.51   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
ribonuc_red_sm   1/1     505   535 ..     1    33 [.     6.1     0.51
Cullin           1/2      85   565 ..     1   550 [.   816.0 1.4e-241
Cullin           2/2     587   804 .]   605   850 .]   377.6 1.2e-109

Alignments of top-scoring domains:
ribonuc_red_sm: domain 1 of 1, from 505 to 535: score 6.1, E = 0.51
                   *->epmLfenpsrfvlYpiqhpdiwEelykkaisnf<-*
                      e++L  +++++ +  i+++di+ ++y+k ++n+
    ZK520.4a   505    EAKL--DSAIVIFRYIEDKDIFQKFYSKMLANR    535

Cullin: domain 1 of 2, from 85 to 565: score 816.0, E = 1.4e-241
                   *->vdfeetWekLkpginqilrnekdmadTnvdvrksmtklsymeLYtnV
                      v+f+++W++L+p i +i++            ++++t+ ++++++++V
    ZK520.4a    85    VEFDKVWVQLRPSIIDIIN------------LRPITNVQWHHKFSDV 119

                   YniclskslstslrgSpvrtggAdrlGekLYnrLkeyvVifaklikeyva
                   Y+ic+s++               ++l+e+LYn++k++       i+e+v+
    ZK520.4a   120 YDICVSIP---------------TPLSERLYNEVKAC-------IQEHVR 147

                   alrkrvWislsndellLetyvkeWerftvsakiinniFkYLnrvwvkker
                   ++r++  i + +++llL++y+k+W++f+++a++i+++F+YLn+++vk++r
    ZK520.4a   148 QKRQD--IVDVDPDLLLQEYHKMWRVFHEGAIFIHRLFGYLNKQFVKQKR 195

                   sTdlDlfaqYaavdgkepiyeiytLaLdiWkevlfknFikdklidalLel
                   +TdlD+faqYaa+ + ++++ei++LaL+iWke+l+k+ i ++l++ lL+
    ZK520.4a   196 CTDLDNFAQYAAFLQIPDVKEIGCLALEIWKEDLVKT-ILPQLVKLLLIA 244

                   ieleRkGniinrahlisgvveslveLgiddsDtdAke.....akkkklsv
                   i+++RkGn++++a+++sgv++s+v+++++d+D++++e+ + +a+++++++
    ZK520.4a   245 IDNDRKGNFPHIANEVSGVINSFVKMEETDFDVVPAEgarykARESTTAF 294

                   YkesFEkpFLsaTeefYkkessnyLqelnsvteYmkkaekrLeeEseera
                   Y+esFEkp+L++Te++Y+  ++++L++l s++eYm+++   Le+E e+ra
    ZK520.4a   295 YQESFEKPLLTDTEQYYSALAQKMLTDL-SCSEYMEQVIVLLEQE-EMRA 342

                   krYLhesRsntkkkLlevcenvLItshldtLhaefsggvkelidakkied
                   k+YLhes   +++k+++ c++v+I+ h+d+Lha +++    li++++++d
    ZK520.4a   343 KKYLHES---SVEKVITLCQKVMIKAHKDKLHAVCHD----LITNEENKD 385

                   LqrmYrLlrrvpnGeleelrksleeyikkeGlnaisnlaseagegkMkla
                   L++mYrLl++++ G l+ ++k++eey+kk+Gl+a+s+l+
    ZK520.4a   386 LRNMYRLLKPIQAG-LSVMVKEFEEYVKKKGLEAVSRLT----------- 423

                   llsalatdPktyVqeLLevhkkfssLvntaFnsavdDagflqaLDkAfet
                        ++ P+++V+++L+v++kf+++ + +F+   dD +f++ LDkA+++
    ZK520.4a   424 ----GENVPQQFVENVLRVYNKFNDMKTAVFM---DDGEFSSGLDKALQG 466

                   FVNsnevsklappaksssksaELLAkYcDdLLkKsklsKkadetelEdkL
                   +VNs+e+ +      s++k++E+LA+Y+D LLkKs  +K+++et+lE+kL
    ZK520.4a   467 VVNSKEPGQ------SVPKASERLARYTDGLLKKS--TKGLSETDLEAKL 508

                   devivvFkYiedKDVFekyYkkmLAKRLiletSaSdDaEemMisKLKqac
                   d++iv+F+YiedKD+F+k+Y+kmLA+RLi+ tS+S+DaEe Mi+KLKqac
    ZK520.4a   509 DSAIVIFRYIEDKDIFQKFYSKMLANRLIASTSISMDAEELMINKLKQAC 558

                   GPyefTsK<-*
                   G yefTs+
    ZK520.4a   559 G-YEFTSS    565

Cullin: domain 2 of 2, from 587 to 804: score 377.6, E = 1.2e-109
                   *->eisLPkeLedsleeFeeFYsskHnGRKLtWlhsLsrGevkanfnpgk
                      +++LP+ L+++++eFe+FY+ kHnGRKLtWl+++s+G+v+ ++++++
    ZK520.4a   587    NFHLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQ 633

                   katYvLqvttfQmaiLLlFNdrlrdsitveeiqeltdaTeipedeLkrtl
                      Yv+q++++Qma LL+F++r  d+i v++i e   +++++ d+L +t+
    ZK520.4a   634 ---YVAQMYVYQMAALLCFERR--DAILVKDIGE---EIGVSGDYLLKTI 675

                   qSLllikakvlvllkkskkedevKesereltpdtkFsvNenFssknKkvR
                   +++l+++     l++++++          lt+d+++++N+ +  ++K+++
    ZK520.4a   676 RTILDVTL----LTCDDQN----------LTADSLVRLNMSM--TSKRMK 709

                   vkinanlvqplqkeaeqEteevhetVeeDRklelqAaIVRIMKaRKkLkH
                   ++++a+  q++ k  e E+e+v +tV +DRk+++++aIVRIMK+RK+LkH
    ZK520.4a   710 FRLQAP--QVN-KAVEKEQEAVANTVSQDRKYYMECAIVRIMKTRKVLKH 756

                   nqLvtEviqQlksRFkPsvsmIKkcIEsLIEKeYleRdeddkdtYeYLA<
                   n+LvtE+++Q+k+RF+P+v++IKk+IE+LIEK+Y++R+ d++d+Y+YLA
    ZK520.4a   757 NALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT-DQNDEYQYLA  804

                   -*

    ZK520.4a     -    -

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