Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5a/seq/ZK550.3
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Query: ZK550.3 CE16734 status:Partially_confirmed TR:O62512 protein_id:CAB05313.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_M3 Peptidase family M3 550.5 7.7e-173 1
Peptidase_C13 Peptidase C13 family 4.7 1.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_C13 1/1 176 194 .. 175 193 .. 4.7 1.5
Peptidase_M3 1/1 298 804 .. 1 512 [] 550.5 7.7e-173
Alignments of top-scoring domains:
Peptidase_C13: domain 1 of 1, from 176 to 194: score 4.7, E = 1.5
*->eelyakDLadtlkkmhask<-*
e l++kD+ d++k++++ k
ZK550.3 176 EKLTNKDFQDAIKQLYEAK 194
Peptidase_M3: domain 1 of 1, from 298 to 804: score 550.5, E = 7.7e-173
*->llkespdrelRkeayrAfysraeqyrntlgsneNsalLeellklRae
+++++ dr+lR +a++++ s+a++++ ++++Ns +eel+++++
ZK550.3 298 FMQYCGDRQLRATAWEKWTSKAGFDH---DFYNNSINIEELRHNNEG 341
llfnAkllgypsyaeaaLedkMakiPetVydFLeelvnklrPllerelal
l Ak+lgy+s ae++L++kMa +PetV+ F+++l+++ rP++ +++++
ZK550.3 342 L---AKTLGYSSVAEHRLANKMAASPETVRGFINALQRRIRPVVIDRMES 388
lkkmkkkelkkplGlefdpelqpWDvaYYsekqreelydP......s.fS
+++++ +++ +++elq++D++Y+++k+ e++y++ + ++s+fS
ZK550.3 389 WSAWAGRCEL------ITGELQAYDMPYVCRKEAEHHYEFffqlksSnFS 432
.l.ldqeelrpyFpleqvleGLfelferLfGitfveekdapgkkalktLa
+++++ +l+++Fp++ +++++++++ ++f+++f++++d+++
ZK550.3 433 fFrVNPLDLMNHFPFWPTFQNIMGVIGHIFNLEFKDITDKGL-------- 474
pLGevwheDVrfyeVfDeilsggllgefYlDlyeRkgKrgGw........
e h+DVr+y+V D+ +sg+++g Y+D+y R++KrgGw+ ++
ZK550.3 475 ---EKAHADVRIYSVGDK-FSGQHYGRLYIDPYDRQNKRGGWnvmlarhy 520
.AysfglvggrplsrkddkdGs.qlpvpyllcNftkq............P
A++++++++++ls k+++++++v lc+ + q+ + ++++ ++
ZK550.3 521 lAFFSNYFCKKILS----KNRNpKNEVSTRLCTSSAQqllqlptdrlfsI 566
ss.....gkPsLLtlddVeTLFH..EfGHsmHsllsrteysyvsgt....
+s+ ++ +++s++++ ++ F++ +fG s++ lls+++y ++s + ++
ZK550.3 567 TSsfsnfFSMSVVEILGLNLNFRnfQFGRSVQLLLSQSPYRDISIPwspf 616
tnvpiDfaElPSqfmEnwlweplllallarphyetgepipeellekliks
+ + +D+a+++ +f+++++++p+lla++++ph+ t+++++ee+ +++ ++
ZK550.3 617 YASDWDAADMFPTFLQMFVTKPNLLATISSPHQITKQSLTEEHANSVALT 666
knvnaalftfrQlmfAaFDqelHeaaeedqpltdedltdveyaeLqkkyy
+++++ ++t+r l++++FD++++e+++++q ++++d +y++++++y+
ZK550.3 667 ISRASLWETYRTLFWSDFDLSIYEMEDRKQ----KFWLD-MYKQMYEEYF 711
gflpvvpldtawpleWarsFgHlfaiGPHgYaAnYYsYlyAevliAAldi
+ ++ ++ ++++p+ sF+++fa++ ++++YY l+Ae+l Aldi
ZK550.3 712 P-FKRAK-NDYQPC----SFTPIFALQ--PHMSMYYRKLWAEML--ALDI 751
fekffeqglneealretGeryykeiLsrGGSldplellkkfggrepsada
+e+f e++ ne +tGer++++iL+rG+++ ++el+k+f+gr+ps+ a
ZK550.3 752 HETFDEED-NE---VQTGERLKTTILNRGSGDVAKELFKRFQGRNPSVGA 797
llralgl<-*
++++++
ZK550.3 798 ICDHYAP 804