Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5a/seq/ZK596.1
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Query: ZK596.1 CE06631 status:Confirmed TR:Q23545 protein_id:CAA93430.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF148 Domain of unknown function DUF148 219.3 5.5e-62 1
DUF232 Putative transcriptional regulator 5.0 6.5 1
Coatomer_WDAD Coatomer WD associated region 2.9 7.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Coatomer_WDAD 1/1 76 97 .. 454 475 .] 2.9 7.4
DUF232 1/1 83 117 .. 103 137 .] 5.0 6.5
DUF148 1/1 40 161 .. 1 128 [] 219.3 5.5e-62
Alignments of top-scoring domains:
Coatomer_WDAD: domain 1 of 1, from 76 to 97: score 2.9, E = 7.4
*->ArThGldseaesiveewkekls<-*
A T+G +s++ ++ ++++ekl
ZK596.1 76 AQTYGVSSQVTEFQTKVEEKLN 97
DUF232: domain 1 of 1, from 83 to 117: score 5.0, E = 6.5
*->klLekqieklekeldelkdqittlleelqevqqkq<-*
+++++ + k e++l+e+k+ +t++ +l++v +
ZK596.1 83 SQVTEFQTKVEEKLNEIKQNVTAVINNLSTVETQL 117
DUF148: domain 1 of 1, from 40 to 161: score 219.3, E = 5.5e-62
*->PpFLrnvpaearqeffaIlknNesLTiaqkeeqlqaWAekygGvsdq
PpFL+nv+ae+rq+ffaI++ N+sLTi+++e+q+++WA++yg vs+q
ZK596.1 40 PPFLQNVTAEGRQAFFAIVS-NTSLTISETESQISSWAQTYG-VSSQ 84
ykeFqknvkaqeaevkknvtqvIsnLSPaAKsVqaqLeaIldNknlTrkq
++eFq++v+++++e+k+nvt+vI+nLS +V +qLeaI++Nk++T+++
ZK596.1 85 VTEFQTKVEEKLNEIKQNVTAVINNLS----TVETQLEAIFANKSQTIRE 130
kheaiqaLkkqypqEvraLffIakqirgrgg<-*
+++a+ +Lk+qypqEv +L+f+ak+++++gg
ZK596.1 131 QFQALGQLKDQYPQEVGVLLFLAKPKGEHGG 161