Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5a/seq/ZK596.1
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Query:  ZK596.1  CE06631    status:Confirmed TR:Q23545 protein_id:CAA93430.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
DUF148        Domain of unknown function DUF148         219.3    5.5e-62   1
DUF232        Putative transcriptional regulator          5.0        6.5   1
Coatomer_WDAD Coatomer WD associated region               2.9        7.4   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Coatomer_WDAD   1/1      76    97 ..   454   475 .]     2.9      7.4
DUF232          1/1      83   117 ..   103   137 .]     5.0      6.5
DUF148          1/1      40   161 ..     1   128 []   219.3  5.5e-62

Alignments of top-scoring domains:
Coatomer_WDAD: domain 1 of 1, from 76 to 97: score 2.9, E = 7.4
                   *->ArThGldseaesiveewkekls<-*
                      A T+G +s++ ++ ++++ekl
     ZK596.1    76    AQTYGVSSQVTEFQTKVEEKLN    97

DUF232: domain 1 of 1, from 83 to 117: score 5.0, E = 6.5
                   *->klLekqieklekeldelkdqittlleelqevqqkq<-*
                      +++++ + k e++l+e+k+ +t++  +l++v  +
     ZK596.1    83    SQVTEFQTKVEEKLNEIKQNVTAVINNLSTVETQL    117

DUF148: domain 1 of 1, from 40 to 161: score 219.3, E = 5.5e-62
                   *->PpFLrnvpaearqeffaIlknNesLTiaqkeeqlqaWAekygGvsdq
                      PpFL+nv+ae+rq+ffaI++ N+sLTi+++e+q+++WA++yg vs+q
     ZK596.1    40    PPFLQNVTAEGRQAFFAIVS-NTSLTISETESQISSWAQTYG-VSSQ 84

                   ykeFqknvkaqeaevkknvtqvIsnLSPaAKsVqaqLeaIldNknlTrkq
                   ++eFq++v+++++e+k+nvt+vI+nLS    +V +qLeaI++Nk++T+++
     ZK596.1    85 VTEFQTKVEEKLNEIKQNVTAVINNLS----TVETQLEAIFANKSQTIRE 130

                   kheaiqaLkkqypqEvraLffIakqirgrgg<-*
                   +++a+ +Lk+qypqEv +L+f+ak+++++gg
     ZK596.1   131 QFQALGQLKDQYPQEVGVLLFLAKPKGEHGG    161



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