Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5a/seq/ZK596.2
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Query: ZK596.2 CE06632 serine\/threonine kinase status:Partially_confirmed TR:Q23546 protein_id:CAA93431.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 45.8 1.3e-11 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 19 150 .. 1 130 [. 45.8 1.3e-11
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 19 to 150: score 45.8, E = 1.3e-11
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
+++l+klGeG+fG Vy++ k k + ++A+K+ e ++ + +
ZK596.2 19 WTILKKLGEGAFGAVYLVSQKEKPKVEYALKVEA-ESDPLGL--LKM 62
EiqilkrLsHpNIv..rligvfed...tddhlylvmEymegGdLfdylrr
E+++l +++ Iv++ +++ +++ + y+vm ++++ +L d+ +
ZK596.2 63 EVAVLLEVKKQKIVgrHFLELADRgnlPQKFNYMVMTLVGK-SLQDLRKT 111
ng.gplsekeakkialQilrGleYLHsngivHRDLKpeN<-*
+++s+ a+++a+Q l+++e LH+ g++HRD+Kp N
ZK596.2 112 APfNKFSMGTAISVARQSLEAVEDLHNIGFLHRDIKPGN 150