Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5a/seq/ZK637.1
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Query: ZK637.1 CE06638 Sugar transporter status:Partially_confirmed SW:P30638 protein_id:CAA77460.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
sugar_tr Sugar (and other) transporter 345.4 6.2e-100 1
ResB ResB-like family 2.0 7.3 1
Na_sulph_symp Sodium:sulfate symporter transmembrane 1.3 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Na_sulph_symp 1/1 212 242 .. 553 585 .] 1.3 9.8
ResB 1/1 238 250 .. 1 13 [. 2.0 7.3
sugar_tr 1/1 72 514 .. 1 488 [] 345.4 6.2e-100
Alignments of top-scoring domains:
Na_sulph_symp: domain 1 of 1, from 212 to 242: score 1.3, E = 9.8
*->vkdwWrlGfil.sIigliiwllvGalWWkaLglw<-*
+ ++W +G+++++++ + ++ ++G W+aL+ +
ZK637.1 212 IESFWAIGAVFeALLAYFVMESFG---WRALMFL 242
ResB: domain 1 of 1, from 238 to 250: score 2.0, E = 7.3
*->vlrfLssLrlAIa<-*
l+fLssL+l+I+
ZK637.1 238 ALMFLSSLPLGIF 250
sugar_tr: domain 1 of 1, from 72 to 514: score 345.4, E = 6.2e-100
*->valvaalgGgflfGyDtgviggflalidflfrfglltssgalasl..
v+alg+ f + ++ g+++++d +++++l s + a++ +
ZK637.1 72 --AVEALGF-GRFQLKLSILTGMAWMAD--AMEMMLLSLISPALAce 113
vgystvltglvvsifflGrliGslfaGklgdrfGRkksllialvlfviGa
+g+s+v+++lv++++f G++++s f+Gk++drfGR+k+l +++++++i++
ZK637.1 114 WGISSVQQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMG 163
llsgaapgytTiGlwafyllivGRvlvGlgvGgasvlvPmYisEiAPkal
++sg++p +fy+l+++R l+G+g+Gg+ + v++Y +E+ P+a
ZK637.1 164 VISGMSP--------HFYVLLFFRGLTGFGIGGVPQSVTLY-AEFLPTAQ 204
RGalgslyqlaitiGilvAaiiglglnktnndsalnswgWRiplglqlvp
R+++++l +++++iG+++ a+++++++++++ WR +++l+++p
ZK637.1 205 RAKCVVLIESFWAIGAVFEALLAYFVMESFG--------WRALMFLSSLP 246
alllligllflPESPRwLvekgkleeArevLaklrgvedvdqeiqeikae
+++++++++lPES R+ ++ g+ e+A e+L+ ++++ + +
ZK637.1 247 LGIFAVASFWLPESARFDMASGHPERALETLQA-------AARMNRVQLP 289
leatvseekagkaswgelfrgrtrpkvrqrllmgvmlqafqQltGiNaif
+ + vs++kag+ s+g++ + + p++r++++++++++a++ a+
ZK637.1 290 TGRLVSSTKAGSESRGDIANLLS-PDLRKTTILLWCIWAIT------AFS 332
YYsptifks...............vGvsdsvasllvtiivg..vvNfvfT
YY++++f++ +++++ +++ ++G +++v++ l+ +++ + ++++
ZK637.1 333 YYGMVLFTTvlfqshdechgglfsNGTQMEVCQPLTRSDYFdlLSTTLAE 382
fvaLi...flvDrfGRRpllllGaagmaicflilgasigvallllnkpkd
f++Li + +++++fGR+++++l a+ ai++++l +++l++
ZK637.1 383 FPGLIitvLIIEWFGRKKTMALEYAVFAIFTFLL-------YFCLDR--- 422
psskaagivaivfillfiafFalgwGpipwvilsElFPtkvRskalalat
+ ++v+i++ af++ g+ +++v+++E++Pt +R+++l+ +
ZK637.1 423 -------FTVTVLIFVARAFIS-GAFQCAYVYTPEVYPTTLRAVGLGTCS 464
aanwlanfiigflfpyitgaiglalggyvflvfagllvlfilfvfffvPE
a+ ++++++++ ++++ l++++++ +a+l+++++ + + +E
ZK637.1 465 AMARIGAIVAS------EKSLS--LPIGIYGTAAILGLIAS---LSLPIE 503
TkGrtLEeieelf<-*
TkGr++ + +l
ZK637.1 504 TKGRQM--MVRLT 514