Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5a/seq/ZK637.10
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Query: ZK637.10 CE15373 Glutathione reductase status:Partially_confirmed SW:P30635 protein_id:CAA77459.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pyr_redox Pyridine nucleotide-disulphide oxidored 288.5 8.6e-83 1
pyr_redox_dim Pyridine nucleotide-disulphide oxidored 148.4 1.2e-40 1
DAO FAD dependent oxidoreductase 13.9 0.0077 1
GMC_oxred_N GMC oxidoreductase 4.9 2 1
GIDA Glucose inhibited division protein A 4.9 1.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GIDA 1/1 21 29 .. 1 9 [. 4.9 1.6
GMC_oxred_N 1/1 21 33 .. 1 13 [. 4.9 2
DAO 1/1 21 51 .. 1 34 [. 13.9 0.0077
pyr_redox 1/1 22 348 .. 1 344 [] 288.5 8.6e-83
pyr_redox_dim 1/1 373 487 .. 1 117 [] 148.4 1.2e-40
Alignments of top-scoring domains:
GIDA: domain 1 of 1, from 21 to 29: score 4.9, E = 1.6
*->fDVIVIGGG<-*
fD IVIG+G
ZK637.10 21 FDLIVIGAG 29
GMC_oxred_N: domain 1 of 1, from 21 to 33: score 4.9, E = 2
*->yDyIivGGGSAGc<-*
+D I++G+GS G+
ZK637.10 21 FDLIVIGAGSGGL 33
DAO: domain 1 of 1, from 21 to 51: score 13.9, E = 0.0077
*->mdvvVIGgGViGlgtAldlalrGqgtlkvalvev<-*
+d++VIG+G Gl++ +a+ G ++val+++
ZK637.10 21 FDLIVIGAGSGGLSCSKRAADLG---ANVALIDA 51
pyr_redox: domain 1 of 1, from 22 to 348: score 288.5, E = 8.6e-83
*->dvvIIGgGpAGlaAAiraaragflGrkrlkvalvEkepp..l.krgt
d+++IG+G++Gl++ +raa lG + val+++ +p+++++++
ZK637.10 22 DLIVIGAGSGGLSCSKRAAD---LG---ANVALIDAVEPtpHgHSWG 62
lGGTClNvgciprkpllkaalvgeeakd.a.f....i.vggpeldlkple
+GGTC Nvgcip+k ++ aa vg+e k+ ++++ ++i+ +++++d+ l
ZK637.10 63 IGGTCANVGCIPKKLMHQAAIVGKELKHaDkYgwngIdQEKIKHDWNVLS 112
qykekgvevllgtevt.ldkknkvvi.................tvlgdge
+ ++ +v+ ++ ++++l+ k+ +++ + ++++ +++++ + +
ZK637.10 113 KNVNDRVKANNWIYRVqLNQKKINYFnayaefvdkdkivitgtDKNKTKN 162
tltydkliiATGarprippipGvpgflfaglegvfglrtsddAlalrevp
l++ +++i TG rp++p+ ++g + +tsdd++ l +vp
ZK637.10 163 FLSAPNVVISTGLRPKYPN-----------IPGAELGITSDDLFTLASVP 201
kgkrvvVvGGGyIGlElAaalarlGaeVTvverrdrllprkddeiaaall
+ ++vGGGy++lE+A++l++++ V v++r+ +l ++d + + ++
ZK637.10 202 --GKTLIVGGGYVALECAGFLSAFNQNVEVLVRS-IPLKGFDRDCVHFVM 248
eklleegGievllgtkgvteiegdgdgglvegvkvkvvktdgerdavede
e+l++ g ++v+ +++ v+++e g+ k kv+ t+
ZK637.10 249 EHLKTTG-VKVKEHVE-VERVEAVGS-------KKKVTFTG--------N 281
geeleaDlVlvAiGrrPntellglegaGiGleldrrGiGgIvVDeylrTs
g++ e+D+V++A Gr+Pn + l+l++aG + +d+r+ G I+ De+ r s
ZK637.10 282 GGVEEYDTVIWAAGRVPNLKSLNLDNAG--VRTDKRS-GKILADEFDRAS 328
gtrTsvpgIyAaGDvaggplrlahv<-*
+ g+yA+GD++ + l+++
ZK637.10 329 -----CNGVYAVGDIVQDRQELTPL 348
pyr_redox_dim: domain 1 of 1, from 373 to 487: score 148.4, E = 1.2e-40
*->vPsvvftdPEiAsVGLTEeeAkekGgdednvkvgkfpFaangrAlay
v+++vft +E+++VGLTEeeA++k+g ed ++v+++ F++ ++ + +
ZK637.10 373 VATTVFTPLELSTVGLTEEEAIQKHG-EDSIEVFHSHFTPFEYVVPQ 418
gegateGfvKlvada.etgriLGaHivGpnAgEklIqeaalAikmGaTve
+++ ++vK v+ ++e+++iLG+H+vGpnA+E +Iq+ a+A + G + +
ZK637.10 419 NKDSGFCYVKAVCTRdESQKILGLHFVGPNAAE-VIQGYAVAFRVGISMS 467
edlantihaHPTlsEalkeaa<-*
dl nti++HP +sE+++ ++
ZK637.10 468 -DLQNTIAIHPCSSEEFVKLH 487