Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5b/seq/ZK669.1a
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Query: ZK669.1a CE06641 N-chimaerin status:Partially_confirmed TR:Q27267
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGAP RhoGAP domain 148.0 1.5e-40 1
DNA_pol_viral_C DNA polymerase (viral) C-terminal dom 6.7 0.079 1
FCH Fes/CIP4 homology domain 5.5 4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FCH 1/1 1 48 [. 1 47 [. 5.5 4
DNA_pol_viral_C 1/1 513 536 .. 1 24 [. 6.7 0.079
RhoGAP 1/1 422 582 .. 1 170 [] 148.0 1.5e-40
Alignments of top-scoring domains:
FCH: domain 1 of 1, from 1 to 48: score 5.5, E = 4
*->dgFwselns.ddgykaLlkrlddglrlleelkkflreRakiEeeYak
+++ + l+s++dg+++ + r+++ ++ ++++r R+++E+++a+
ZK669.1a 1 MEIDKLLISrTDGVDVAFERTKAWSTYSKDVISYVRARIQLEQDHAR 47
k<-*
k
ZK669.1a 48 K 48
DNA_pol_viral_C: domain 1 of 1, from 513 to 536: score 6.7, E = 0.079
*->gskgvlpqekrvkklktvlkkipV<-*
+ +g+ +e+rv+ l++ +k+pV
ZK669.1a 513 QASGSNCEEERVEQLRQLARKLPV 536
RhoGAP: domain 1 of 1, from 422 to 582: score 148.0, E = 1.5e-40
*->PiivekcveyIeklYPLaerGlqeEGIYRvsGsasrvkeLreafdkd
P+i+ek ++ + + rGl+ GIYR G s+++e+ +af+++
ZK669.1a 422 PLIIEKSIDQLQR------RGLRAKGIYRTCGVKSKIEEICNAFERS 462
gapdslelsekewfDvhvvaglLKlYLReLPePLipydlyeefiraake.
+ +d+++l ++ ++ +a+++KlYLR+LPePL++++ly++f r+ e
ZK669.1a 463 SSDDEVCLDNE---NPMNLASVVKLYLRKLPEPLLTFELYDDFVRLGTEc 509
......qiedpderlralkellsSkLPrahynTLryLltHLnrvaeiyie
+ + + ++ ++er + l++l + kLP ++y+TL++++ HLnrv+
ZK669.1a 510 csaqasGSNCEEERVEQLRQLAR-KLPVHNYETLKFIMLHLNRVSW---- 554
nsavNkMnarNLAivFgPtLlrppdkesnd<-*
+ +vN M+++NL++v++P+L++ ++ + +
ZK669.1a 555 FHEVNLMSTSNLSTVIAPSLIWMSP--KRI 582