Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5b/seq/ZK688.6a
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Query: ZK688.6a CE00464 status:Partially_confirmed SW:P34676 protein_id:AAA28227.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
abhydrolase alpha/beta hydrolase fold 45.4 6.2e-13 1
Peptidase_S9 Prolyl oligopeptidase family 8.4 0.25 1
DUF310 Protein of unknown function (DUF310) 3.8 7 1
CBM_4_9 Carbohydrate binding domain 3.5 6.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF310 1/1 114 121 .. 147 154 .] 3.8 7
Peptidase_S9 1/1 168 177 .. 72 81 .] 8.4 0.25
abhydrolase 1/1 107 312 .. 1 178 [. 45.4 6.2e-13
CBM_4_9 1/1 425 452 .. 1 29 [. 3.5 6.1
Alignments of top-scoring domains:
DUF310: domain 1 of 1, from 114 to 121: score 3.8, E = 7
*->HKFyakse<-*
H+Fy+ks+
ZK688.6a 114 HRFYGKSQ 121
Peptidase_S9: domain 1 of 1, from 168 to 177: score 8.4, E = 0.25
*->ifGgSnGGlL<-*
+fGgS+GG+L
ZK688.6a 168 AFGGSYGGML 177
abhydrolase: domain 1 of 1, from 107 to 312: score 45.4, E = 6.2e-13
*->frvillDlrGfGeSsp.........sdlaeyrfddlaedlealldal
+ v+ +r++G+S+p ++++ ++ + l + + ++ +d++ + +
ZK688.6a 107 AAVVFVEHRFYGKSQPfknesytdiRHLGYLSSQQALADFALSVQFF 153
glekp.......vilvGhSmGGaialayaakyPelrvkalvlvspp....
+ ek+++ +++ vi++G+S+GG+++++++ kyP+ v++++++s+p
ZK688.6a 154 KNEKIkgaqksaVIAFGGSYGGMLSAWFRIKYPH-IVDGAIAASAPvfwf 202
.........lpaglssdlfprqgnleglllanfrnrlsrsveallgralk
++++ +++ ++++ +++++ + +n++ +++ + + ++ +++++
ZK688.6a 203 tdsnipedvYDFIVTRAFLDAGCNRKAIEKGWIALDELAKSDSGRQYLN- 251
qffllgrplvsdflkqaedwlsslirqgeddggdgllga.avalgkllqw
+ + +p ++ ++k ++l+++ir+++ +++ + ++ l+ l +w
ZK688.6a 252 -VLYKLDPKSKLENKDDIGFLKQYIRESMEAMAMVNYPYpTSFLSSLPAW 300
dls.alkdikvP<-*
++++a+k ++P
ZK688.6a 301 PVKeACKSASQP 312
CBM_4_9: domain 1 of 1, from 425 to 452: score 3.5, E = 6.1
*->gnlikNgtFEdggtsgWkarggstvkavv<-*
+ +N F +g +++W ++g++ ++++v
ZK688.6a 425 LPSASNIVFSNGYLDPWSGGGYD-HSDKV 452