Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5b/seq/ZK783.1
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Query: ZK783.1 CE25695 status:Partially_confirmed TR:Q23587 protein_id:AAC24418.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
EGF EGF-like domain 166.4 4.7e-46 28
DUF589 Family of unknown function (DUF589) 3.7 6.6 1
NifQ NifQ 2.6 8.6 1
ANATO Anaphylotoxin-like domain 2.4 2.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
EGF 1/28 87 117 .. 1 45 [] 18.0 0.0022
EGF 2/28 125 158 .. 1 45 [] 28.1 3e-06
EGF 3/28 164 196 .. 1 43 [. 20.8 0.00035
EGF 4/28 212 249 .. 1 45 [] 4.3 16
EGF 5/28 255 291 .. 1 45 [] 30.0 8.9e-07
EGF 6/28 307 340 .. 1 45 [] 20.5 0.00043
EGF 7/28 346 378 .. 1 45 [] 19.3 0.00095
EGF 8/28 386 415 .. 1 45 [] -1.5 7.1e+02
ANATO 1/1 444 452 .. 1 9 [. 2.4 2.5
EGF 9/28 421 454 .. 1 45 [] 0.3 2.2e+02
EGF 10/28 516 539 .. 1 42 [. -2.0 9.8e+02
EGF 11/28 1414 1448 .. 1 45 [] 9.1 0.71
EGF 12/28 1454 1490 .. 1 45 [] 24.2 3.8e-05
EGF 13/28 1496 1532 .. 1 45 [] 21.2 0.00028
EGF 14/28 1588 1623 .. 1 45 [] 20.6 0.00042
NifQ 1/1 1627 1637 .. 166 176 .] 2.6 8.6
EGF 15/28 1629 1659 .. 1 43 [. 26.3 1e-05
EGF 16/28 1701 1716 .. 29 45 .] 2.4 57
EGF 17/28 1722 1758 .. 1 45 [] 24.7 2.8e-05
EGF 18/28 1764 1799 .. 1 45 [] 3.9 21
DUF589 1/1 1814 1825 .. 165 176 .] 3.7 6.6
EGF 19/28 1861 1896 .. 1 45 [] 23.2 7.5e-05
EGF 20/28 1902 1937 .. 1 45 [] 8.8 0.87
EGF 21/28 2027 2054 .. 1 43 [. 10.5 0.3
EGF 22/28 2067 2096 .. 1 43 [. 6.6 3.7
EGF 23/28 2107 2138 .. 1 45 [] 16.1 0.0078
EGF 24/28 2148 2176 .. 1 45 [] -5.4 8.2e+03
EGF 25/28 2183 2216 .. 1 45 [] 18.3 0.0019
EGF 26/28 2222 2250 .. 1 43 [. 14.7 0.019
EGF 27/28 2279 2296 .. 1 18 [. -0.2 3.1e+02
EGF 28/28 2315 2350 .. 1 45 [] 17.4 0.0032
Alignments of top-scoring domains:
EGF: domain 1 of 28, from 87 to 117: score 18.0, E = 0.0022
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C++ Cs+ G C++ + +++C C G ++G C
ZK783.1 87 CQS--TCSGKGACLYDGA-------KPQCYCDSG-----FSGSAC 117
*
ZK783.1 - -
EGF: domain 2 of 28, from 125 to 158: score 28.1, E = 3e-06
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C ++ pC+ ++C+nt g +y+C+C pG ++++G+ C
ZK783.1 125 CLEH-PCHMMAQCQNTLG-------SYECRCLPG---YEGNGHEC 158
*
ZK783.1 - -
EGF: domain 3 of 28, from 164 to 196: score 20.8, E = 0.00035
*->Capnn..pCsngGtCvntpggssdnfggytCeCppGdyylsytGk<-
C++ ++ C ++ +C+n+pg +y+C C++G +t k
ZK783.1 164 CSDKLtsRCPEHSKCINLPG-------TYYCNCTQG-----FTPK 196
*
ZK783.1 - -
EGF: domain 4 of 28, from 212 to 249: score 4.3, E = 16
*->Capnn.pCsngGtCvntpggssdnfggytCe..CppGdyylsytGkr
C ++++C+ + +C n+ g +++C+++C pG ++ + +
ZK783.1 212 CETGAhNCDADEICENSIG-------SFKCVnkCSPG---YELIDGK 248
C<-*
C
ZK783.1 249 C 249
EGF: domain 5 of 28, from 255 to 291: score 30.0, E = 8.9e-07
*->Capnn..pCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC
C ++ + C+ ++ Cvnt g gy+CeC +G ++++Gk+C
ZK783.1 255 CGSEKlhKCDVRADCVNTIG-------GYECECEEG---FEGDGKNC 291
<-*
ZK783.1 - -
EGF: domain 6 of 28, from 307 to 340: score 20.5, E = 0.00043
*->Capnn.pCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<
C +n C+ ++ C+ + + C+C+ G + ++G++C
ZK783.1 307 CRKNSaICDRHASCHIVLD---------ICDCKTG---YTGDGITC 340
-*
ZK783.1 - -
EGF: domain 7 of 28, from 346 to 378: score 19.3, E = 0.00095
*->Capnn.pCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<
C+ ++pCs gG+C+n+ g gy C C++G + +C
ZK783.1 346 CDAKDtPCSDGGRCLNLDG-------GYVC-CKNG-----QDDATC 378
-*
ZK783.1 - -
EGF: domain 8 of 28, from 386 to 415: score -1.5, E = 7.1e+02
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C+ +C +++C n tC C G + + k+C
ZK783.1 386 CSG--GCGDNAICSNA-----------TCACIDG--FRGDPHKKC 415
*
ZK783.1 - -
ANATO: domain 1 of 1, from 444 to 452: score 2.4, E = 2.5
*->CCeDGmren<-*
CC++G +e+
ZK783.1 444 CCQHGSTEA 452
EGF: domain 9 of 28, from 421 to 454: score 0.3, E = 2.2e+02
*->Capnn.pCsngG.tCvntpggssdnfggytCeCppGdyylsytGkrC
C +n+++C + G++Cvn+ g g++C C++G t C
ZK783.1 421 CVENDsVCGGVGdRCVNLFG-------GFKC-CQHG-----STEAEC 454
<-*
ZK783.1 - -
[output cut off at A = 10 top alignments]