Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5b/seq/ZK783.2
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: ZK783.2 CE00841 tyrosine phosphatase status:Partially_confirmed TR:Q23588 protein_id:AAC24419.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 129.9 7.6e-36 1
PNP_UDP_1 Phosphorylase family 18.4 0.00011 2
UPF0016 Uncharacterized protein family UPF0016 3.6 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0016 1/1 105 128 .. 53 76 .] 3.6 9.7
Y_phosphatase 1/1 7 183 .. 60 274 .] 129.9 7.6e-36
PNP_UDP_1 1/2 516 554 .. 53 86 .. 3.1 5.6
PNP_UDP_1 2/2 597 663 .. 152 224 .. 15.2 0.0011
Alignments of top-scoring domains:
UPF0016: domain 1 of 1, from 105 to 128: score 3.6, E = 9.7
*->kllatripeRtvtligGiLFliFG<-*
k+++++++e+ v+ +g+ + +FG
ZK783.2 105 KMIHQFLSEKQVQNAGVCVVSLFG 128
Y_phosphatase: domain 1 of 1, from 7 to 183: score 129.9, E = 7.6e-36
*->ieDFWrMvweqkv.tvIVMLtklvEkgreeeKtCaqYWPeeggeegg
+eDFW+M+++++++ v M ++ k+ + + e+gg
ZK783.2 7 VEDFWYMIYQEQIhLVYLMVPDDKLKNT--TT---SLFND---ENGG 45
sltyGditVtlvseekk.ddddytvRtleltn.gdeskneakqeklkget
++ G+++++++ ++ +d ++yt+++l+ n++ +
ZK783.2 46 YQYTGKMFINNRRADVSgDPKEYTIEVLPEGNsD---------------S 80
rtVthyhytgWPDhgvPesgpkslldflrkvrksqsqenesgeaspdsgp
+++++h+ W++ + P+ + ++++++++ + ++ +++g
ZK783.2 81 VICQVHHHAPWKHLQQPPK-TLPIIKMIHQFLSEKQ--------VQNAG- 120
rSsctgPivVHCSAGiGRTGtfiaidillqqleaegvvidifdivkelRs
++V++ G+GR++ fi++ ++++ql ++ ++ +i +i+k + +
ZK783.2 121 -------VCVVSLFGCGRACSFIGALYAINQLNNGIEP-NICEIMKNIKQ 162
qRpgmVQteeQYiFiydaile<-*
qRpg V++++QY iy ++ +
ZK783.2 163 QRPGGVESFAQYASIYAIVFD 183
PNP_UDP_1: domain 1 of 2, from 516 to 554: score 3.1, E = 5.6
*->gsGiGkPSiaIytte...Liqeygvd..tiIrtGsaGaL<-*
++G+G PS +I + e+ +L+ + gv+++t+Ir G+ G++
ZK783.2 516 NHGMGTPSLSIMLVEsfkLMHHAGVKnpTFIRLGTSGGV 554
PNP_UDP_1: domain 2 of 2, from 597 to 663: score 15.2, E = 0.0011
*->eklvtaAkegglelhivqrLrvGtvfSgDaFynedeRYDTYSGkVvR
e+l++ ke+ ++ + +G + ++D+Fy ++ R D Y
ZK783.2 597 EALCEVGKEKSIPVE------TGKTMCADDFYEGQMRLDGYFCDYEE 637
n.yyeraelraelsgalAVEMEaAala<-*
++ y +++++ l g+ ++EME++ +a
ZK783.2 638 EdKYAFLRKLNAL-GVRNIEMESTCFA 663