Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5b/seq/ZK783.2
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Query:  ZK783.2  CE00841   tyrosine phosphatase status:Partially_confirmed TR:Q23588 protein_id:AAC24419.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Y_phosphatase Protein-tyrosine phosphatase              129.9    7.6e-36   1
PNP_UDP_1     Phosphorylase family                       18.4    0.00011   2
UPF0016       Uncharacterized protein family UPF0016      3.6        9.7   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
UPF0016         1/1     105   128 ..    53    76 .]     3.6      9.7
Y_phosphatase   1/1       7   183 ..    60   274 .]   129.9  7.6e-36
PNP_UDP_1       1/2     516   554 ..    53    86 ..     3.1      5.6
PNP_UDP_1       2/2     597   663 ..   152   224 ..    15.2   0.0011

Alignments of top-scoring domains:
UPF0016: domain 1 of 1, from 105 to 128: score 3.6, E = 9.7
                   *->kllatripeRtvtligGiLFliFG<-*
                      k+++++++e+ v+ +g+ +  +FG
     ZK783.2   105    KMIHQFLSEKQVQNAGVCVVSLFG    128

Y_phosphatase: domain 1 of 1, from 7 to 183: score 129.9, E = 7.6e-36
                   *->ieDFWrMvweqkv.tvIVMLtklvEkgreeeKtCaqYWPeeggeegg
                      +eDFW+M+++++++ v  M  ++  k+          + +   e+gg
     ZK783.2     7    VEDFWYMIYQEQIhLVYLMVPDDKLKNT--TT---SLFND---ENGG 45

                   sltyGditVtlvseekk.ddddytvRtleltn.gdeskneakqeklkget
                   ++  G+++++++  ++ +d ++yt+++l+  n++               +
     ZK783.2    46 YQYTGKMFINNRRADVSgDPKEYTIEVLPEGNsD---------------S 80

                   rtVthyhytgWPDhgvPesgpkslldflrkvrksqsqenesgeaspdsgp
                    +++++h+  W++ + P+  + ++++++++  + ++         +++g
     ZK783.2    81 VICQVHHHAPWKHLQQPPK-TLPIIKMIHQFLSEKQ--------VQNAG- 120

                   rSsctgPivVHCSAGiGRTGtfiaidillqqleaegvvidifdivkelRs
                          ++V++  G+GR++ fi++ ++++ql ++ ++ +i +i+k + +
     ZK783.2   121 -------VCVVSLFGCGRACSFIGALYAINQLNNGIEP-NICEIMKNIKQ 162

                   qRpgmVQteeQYiFiydaile<-*
                   qRpg V++++QY  iy ++ +
     ZK783.2   163 QRPGGVESFAQYASIYAIVFD    183

PNP_UDP_1: domain 1 of 2, from 516 to 554: score 3.1, E = 5.6
                   *->gsGiGkPSiaIytte...Liqeygvd..tiIrtGsaGaL<-*
                      ++G+G PS +I + e+ +L+ + gv+++t+Ir G+ G++
     ZK783.2   516    NHGMGTPSLSIMLVEsfkLMHHAGVKnpTFIRLGTSGGV    554

PNP_UDP_1: domain 2 of 2, from 597 to 663: score 15.2, E = 0.0011
                   *->eklvtaAkegglelhivqrLrvGtvfSgDaFynedeRYDTYSGkVvR
                      e+l++  ke+ ++ +      +G + ++D+Fy ++ R D Y
     ZK783.2   597    EALCEVGKEKSIPVE------TGKTMCADDFYEGQMRLDGYFCDYEE 637

                   n.yyeraelraelsgalAVEMEaAala<-*
                   ++ y +++++  l g+ ++EME++ +a
     ZK783.2   638 EdKYAFLRKLNAL-GVRNIEMESTCFA    663



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