Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5b/seq/ZK809.1
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Query: ZK809.1 CE24741 protein-tyrosine phosphatase status:Partially_confirmed TR:Q23602 protein_id:CAA92641.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 148.0 5.6e-41 1
APSES APSES domain 13.5 0.026 1
ATP1G1_PLM_MAT8 ATP1G1/PLM/MAT8 family 5.1 3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ATP1G1_PLM_MAT8 1/1 149 162 .. 44 57 .] 5.1 3
APSES 1/1 173 188 .. 1 16 [. 13.5 0.026
Y_phosphatase 1/1 156 389 .. 1 274 [] 148.0 5.6e-41
Alignments of top-scoring domains:
ATP1G1_PLM_MAT8: domain 1 of 1, from 149 to 162: score 5.1, E = 3
*->RCkfnkkqrqlned<-*
RCk ++++++n++
ZK809.1 149 RCKMWQSHSSRNRH 162
APSES: domain 1 of 1, from 173 to 188: score 13.5, E = 0.026
*->svmRRakDswiNaTqi<-*
+++ ++kD++iN+++i
ZK809.1 173 IIVQMCKDDYINGSKI 188
Y_phosphatase: domain 1 of 1, from 156 to 389: score 148.0, E = 5.6e-41
*->NkeKNRykdilpyDhtRVkLk.egsDYINAnyidgpqsrtlvvykkp
+ ++NR++d +yDh+R++++ +DYIN + i++p + p
ZK809.1 156 HSSRNRHTDYKCYDHNRIIVQmCKDDYINGSKINVP-------HFTP 195
kayIaTQgPlp..nTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaq
y + +++ + +e+FWr v++++++++ + +++E ++
ZK809.1 196 SIYLVQLPKMDsvDAVEEFWRVVFHEQCQTVHIIARPEELTN--PA-IDK 242
YWPeeggeeggsltyG.ditVtlvseekk...ddddytvRtleltn.gde
+ + e+g + y ++++V+++++ekk++ d ++v+ l+ +++
ZK809.1 243 LFCQ----ESGAWLYAnGFFVNTRKVEKKenaKADMFVVELLPEGCsN-- 286
skneakqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqs
++ +y +t W+ P+ + + ++ +++ k +
ZK809.1 287 -------------AVMCSVYLHTYWKPLFGPDR-FGAQIRAAHQIAKNEN 322
qenesgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaeg
++ P+v+ + +G GR +++ ++ ++ +ql++++
ZK809.1 323 ----------GNS-------PTVIASVNGSGRNAALLTLAVVEDQLTRGK 355
vvidifdivkelRsqRpgmVQteeQYiFiydaile<-*
++ i +iv+++R+qRp++V+++ QY+ +y+a +
ZK809.1 356 EP-KISEIVRTIREQRPQSVDSYIQYVSLYMATNW 389