Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5b/seq/ZK809.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: ZK809.4 CE31754 locus:ent-1 hydrophobic nucleolar protein like status:Confirmed TR:Q23599 protein_id:CAA92642.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Nucleoside_tran Nucleoside transporter 552.6 2.7e-162 1
GntP_permease GntP family permease 3.4 3.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Nucleoside_tran 1/1 151 441 .. 1 346 [] 552.6 2.7e-162
GntP_permease 1/1 430 442 .. 450 463 .] 3.4 3.5
Alignments of top-scoring domains:
Nucleoside_tran: domain 1 of 1, from 151 to 441: score 552.6, E = 2.7e-162
*->limivviNsmgnAllQnSlfGlAgefPskYtqavliGqnlaGvlvsl
+i+i+v+N+ +n+++QnS+fGlA+e+P+kYt+av+iG+nl+G++v+l
ZK809.4 151 IITIIVLNG-ANGVYQNSIFGLASELPFKYTNAVIIGNNLCGTFVTL 196
lmialtkAsnseDPvslsesAllYFitalvvvviCiicylvlkklrFyry
l++ +tkA++++ + +++++YF++al+++v+C+i++++lkk+rFy+y
ZK809.4 197 LSM-STKAVTRN----ILDRSFAYFSIALITLVFCFISFHILKKQRFYQY 241
ylqrkdGHiTdlagpseqetkeelisegeedqpesgskvaLhrelsgtfe
y++r++ +q++k+++++++e+ ++++ +++tf+
ZK809.4 242 YSTRAE----------RQRNKNDEAVDSEG---KVAN-------YIATFK 271
pnseqlenvflGkvsffviLakfpvlalsvvliftvtlsvFPaptaevvs
++++ql+nvfl +ffv+L++fp+++++v++++++++++FP+p
ZK809.4 272 EAFPQLINVFL---VFFVTLSIFPGVMMYVKDEKKGGVYDFPLP------ 312
SeaghlsewsekYFmpvlcFLlFNlFDllGrilaavfmwPgqKFdsrwlp
+ YFm+v++FL+FN+F+++G+i+a++++wP++ +++w+p
ZK809.4 313 ---------QK-YFMDVTTFLQFNVFAFIGSIVAGRKQWPAP--NKLWIP 350
vlvilRllFiPLFllCnykprDssrGDEalPvfFesdalFiilmalfafs
v+ lRll+iP+F++Cny+p+ +r +lPvfFes++lF+i++a+++f+
ZK809.4 351 VY--LRLLYIPFFIFCNYLPE--TR---SLPVFFESTWLFVIIAASMSFG 393
nGYLsSLaMmyaPksVdnpheaetAGaltvfFLilGLalGavfSfvira<
+GY+s+LaMmy++k+Vd p++a++AG++++fFLi+G+++G++f++vi++
ZK809.4 394 SGYFSGLAMMYTSKTVD-PSKAQVAGMMAGFFLISGIVSGLIFTMVIKM 441
-*
ZK809.4 - -
GntP_permease: domain 1 of 1, from 430 to 442: score 3.4, E = 3.5
*->vvGLifvLiLlsLv<-*
v GLif++ ++ +v
ZK809.4 430 VSGLIFTM-VIKMV 442