Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5b/seq/ZK813.1
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Query: ZK813.1 CE05110 status:Partially_confirmed TR:Q23606 protein_id:AAB52654.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Chorion_2 Chorion family 2 233.8 2.4e-66 1
Vitellogenin_N Lipoprotein amino terminal region 2.0 5.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Vitellogenin_N 1/1 46 109 .. 358 417 .. 2.0 5.7
Chorion_2 1/1 1 128 [. 1 191 [] 233.8 2.4e-66
Alignments of top-scoring domains:
Vitellogenin_N: domain 1 of 1, from 46 to 109: score 2.0, E = 5.7
*->skkravrs..............nssssssssssssssssSSSSSSSS
+k +++r+++++++++++++++++s+ss+sss+s s+ SSS S
ZK813.1 46 RKHHRRRHgrrgrhgrhgrhgrRHSDSSDSSSESRSR-----SSSGS 87
SSSessSssssysSEEylyqqp.leeAP<-*
SSSes+S + +++y+ p+ +AP
ZK813.1 88 SSSESRSYE------RDYYYVPrWPTAP 109
Chorion_2: domain 1 of 1, from 1 to 128: score 233.8, E = 2.4e-66
*->MKfLiiFVtLALiAcvsAnpYGgnqGYGSvPvGGqadyvqPALtvKA
MK+Li V+LALiA+v+A++YG+ q+dy++
ZK813.1 1 MKLLI--VLLALIAVVVASSYGA-----------QNDYPT------- 27
ivPnvGyGGGGyGnGNPFYgPakrvrseevvVpaHYgpsrGrYGiPAPtA
+vGyG++Gy+nGNPFY+P+k++r+++ ++ +g ++Gr+G
ZK813.1 28 ---DVGYGNPGYDNGNPFYKPRKHHRRRH---GR-RG-RHGRHG------ 63
WNLSPRHAGAALtPVNARtiSgyGrppsLrSaSSgpsASAAAaaAsAgln
++Gr++s++S+SS++s+S++++++s++ +
ZK813.1 64 ---------------------RHGRRHSDSSDSSSESRSRSSSGSSSS-E 91
pgsYkQDYyaVpsYeldgsynGpsrGNDVPAgAGqLSYGyGqga<-*
++sY++DYy+Vp++++++sy G+ +GNDVPAg ++yG++a
ZK813.1 92 SRSYERDYYYVPRWPTAPSY-GN-TGNDVPAG-----TAYGSPA 128