Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5c/seq/ZK829.9
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Query: ZK829.9 CE06657 glucose transporter status:Partially_confirmed TR:Q23626 protein_id:CAA98077.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
sugar_tr Sugar (and other) transporter 112.9 8.8e-32 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
sugar_tr 1/1 81 471 .. 66 488 .] 112.9 8.8e-32
Alignments of top-scoring domains:
sugar_tr: domain 1 of 1, from 81 to 471: score 112.9, E = 8.8e-32
*->iGslfaGklgdrfGRkksllialvlfviGallsgaapgytTiGlwaf
+G+ + ++l+d +GRk +++++++++ +++++ +a + +
ZK829.9 81 VGAMSSPFLCDNYGRKVAFALSIAFMTLAGAMQMLASFT-----PYS 122
yllivGRvlvGlgvGgasvlvPmYisEiAPkalRGalgslyqlaitiGil
++li+GR+++ + + ++ +Y+ Ei+P +lRG++ sly+++ ++ l
ZK829.9 123 EVLIAGRLIAAVFSPLSDAALILYLQEISPSSLRGTMSSLYSTGYSTMCL 172
vAaiiglglnktnndsalnswgWRiplglqlvpalllligllflPESPRw
++ ++g ++ + ++l++ +p++l +++l+ P++P +
ZK829.9 173 LGMLLGHEGLLGHS--------LSVLLFVPVIPGILSTAFILWMPDTPKF 214
Lvekgkle.eArevLaklrgv......edvdqeiqeikaeleatvsee.k
L++++k A ++L+ g+ ++++ +++e ++ + ++see++
ZK829.9 215 LLLVKKDKvAALKSLRFFQGSlpdqtlLIDSMEHHHKEDANNNNNSEEkA 264
agkaswgelfrgrtrpkvrqrllmgvmlqafqQltGiNaifYYsptifks
++ s+ ++ ++ +r++++++v ++++ i s+ +f++
ZK829.9 265 DSATSVMHILKKPH---LRKAMMLSVSAAILTLPFY--PILQNSTFFFTD 309
vGvsdsvasllvtiivgvvNfvfTfvaLiflvDrfGRRpllllGaagmai
Gv++ ++ l++ ++vv +++ +++ +++D++ RR lll +++ +
ZK829.9 310 MGVDMKTS-QLASSFMMVVLTISSICS-TLIIDKLPRRILLLTCGSCTVL 357
cflilgasigvallllnkpkdpsskaagivaivfillfiafFalgwGpip
+++i++ v +k+ +a+ +++ fi+ +++g+Gp+
ZK829.9 358 FLTIFA----VSEQMHQKS----------IAMGACFGFIMSYGIGVGPVI 393
wvilsElFPtkvRskalalataanwlanfiigflfpyitgaiglalggyv
w i++El+P+ Rs + l ++ + ++ +f++ +++ +ig ++++
ZK829.9 394 WSIPPELSPLADRSMMFCLVYSIHSCLVVVTNFATIPLFMSIG---AFSF 440
flvfagllvlfilfvfffvPETkGrtLEeieelf<-*
l+fa+ +++ ++ ++++PET G ei+++
ZK829.9 441 VLLFAIPSAFALVYLLVCLPETSG---REIHVII 471