Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5c/seq/ZK892.1b
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Query: ZK892.1b CE18468 locus:lec-3 galactoside-binding lectin status:Confirmed TR:Q95ZI4 protein_id:CAC42392.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Gal-bind_lectin Galactoside-binding lectin 282.8 4.4e-81 2
ABM Antibiotic biosynthesis monooxygenase 8.5 0.94 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ABM 1/1 127 141 .. 35 51 .. 8.5 0.94
Gal-bind_lectin 1/2 10 141 .. 1 139 [] 112.0 2.9e-31
Gal-bind_lectin 2/2 149 277 .. 1 139 [] 176.8 4.5e-50
Alignments of top-scoring domains:
ABM: domain 1 of 1, from 127 to 141: score 8.5, E = 0.94
*->HlYtStDGtrVlNYaQW<-*
Hl S DG VlN+ QW
ZK892.1b 127 HL--SIDGDVVLNHVQW 141
Gal-bind_lectin: domain 1 of 2, from 10 to 141: score 112.0, E = 2.9e-31
*->pglvalnlglkpGktltVkGtVapknakrFavNlgkgskE..Endlv
p+ + l + pG+tl+++G+ + +krF +Nl+k+s + + nd+
ZK892.1b 10 PYRSKLTERIEPGQTLIIRGKTID-ESKRFNINLHKDSPDfsGNDVP 55
LHfNPRFneaHGDqntvVcNSkenGDNeWGtEqReaafPFqaGqpFeisI
LH+ RF+ ++ +V N +++G +WG+E+R a++P ++G++F+i+I
ZK892.1b 56 LHLSIRFD-EG----KIVYNAYTKG--TWGKEER-AKNPIKKGDDFDIRI 97
sveedkfkVkvndghefe.FphRlkleavqyLgikGDikltsikf<-*
+ + +kf+V++n e+++F hR++l +v+ L+i+GD+ l +++
ZK892.1b 98 RAHDSKFQVSIN-HKEVKnFEHRIPLNSVSHLSIDGDVVLNHVQW 141
Gal-bind_lectin: domain 2 of 2, from 149 to 277: score 176.8, E = 4.5e-50
*->pglvalnlg.lkpGktltVkGtVapknakrFavNlgkgskEEndlvL
p++++++ ++l pGktl V Gt+++ +ak F +Nl+k++ +d++L
ZK892.1b 149 PYESGIAADgLVPGKTLVVYGTPEK-KAKKFNINLLKKN---GDIAL 191
HfNPRFneaHGDqntvVcNSkenGDNeWGtEqReaafPFqaGqpFeisIs
HfNPRF+e+ +vV+NS+ nG eWG+E+Re+++PF++ F++ I+
ZK892.1b 192 HFNPRFDEK-----SVVRNSLVNG--EWGNEEREGKNPFERLTAFDLEIR 234
veedkfkVkvndghefeFphRlkleavqyLgikGDikltsikf<-*
+ee +f+++vn+++ ++++hR +++++++L+i GDi+lt+i++
ZK892.1b 235 NEEFAFQIFVNGERFASYAHRVDPHDIAGLQIQGDIELTGIQV 277