Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5c/seq/ZK938.2
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Query: ZK938.2 CE02397 status:Partially_confirmed TR:Q23672 protein_id:CAA90142.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
arrestin Arrestin (or S-antigen), N-terminal d 151.0 2.1e-41 1
arrestin_C Arrestin (or S-antigen), C-terminal d 112.4 8.8e-30 1
MaoC_dehydratas MaoC like domain 8.4 0.42 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MaoC_dehydratas 1/1 20 52 .. 98 133 .] 8.4 0.42
arrestin 1/1 23 143 .. 1 152 [] 151.0 2.1e-41
arrestin_C 1/1 163 311 .. 1 162 [. 112.4 8.8e-30
Alignments of top-scoring domains:
MaoC_dehydratas: domain 1 of 1, from 20 to 52: score 8.4, E = 0.42
*->fpGdtlrvevevvgvkrdvksevktvettvgvtvga<-*
+pGdt++++v+ ++ k++ + + +v+ ++ +++
ZK938.2 20 YPGDTVKGTVVLTN-KTPLD-AR-CVTIKCRGKSET 52
arrestin: domain 1 of 1, from 23 to 143: score 151.0, E = 2.1e-41
*->epvsGrVvLdtdepkkvravrltlvGyartgWeesevsglkesesvn
++v+G+VvL+++ p+++r+v+++++G+++t+ ++ ++k
ZK938.2 23 DTVKGTVVLTNKTPLDARCVTIKCRGKSETYLINWTDLYCK------ 63
ysgdvtyldeqvylwgsskkettdgqerlinlpaGtheyPFsfeLPqknl
+++++++ ++w+s +dgq++ +p G + ++F+++LP +++
ZK938.2 64 ----KDLFRKSEMVWVS-----KDGQNK---MPEGGYIWTFEIKLP-IDC 100
PsSftLQPGPDEGkhGgIrYevkatldrptewkfdkkhkarskvftVirk
P++ EG Gg +Y vk+++drp wk+++ ++ k+++V rk
ZK938.2 101 PPTH-------EGYAGGTNYKVKVEIDRP--WKCNIREE---KEIMVTRK 138
ldlns<-*
ld+ +
ZK938.2 139 LDIEK 143
arrestin_C: domain 1 of 1, from 163 to 311: score 112.4, E = 8.8e-30
*->ssGpltlelslpktgYvpGEkIpvtveIdNhSsrktvkkikasLvqq
s+Gp++l++s+p +++ G++ ++++e++NhSs +t+++i +++ +q
ZK938.2 163 SNGPISLKVSVPTLVFRQGQTAEFHFEVKNHSS-STINEIFIKFGKQ 208
vtyvaysngsylktvarlesneeecpvapsstlskerkdekllvankekg
v+y+++++ + ++++++++++++ +++++ss++ +e + +k+ va++ +
ZK938.2 209 VHYHSRNQLTPCRKFDSHSCPLSVYHQTNSSNCIGEATALKVNVAPYSTK 258
gvaldskkkfeSfdknLriPttpptttsfesplIsvsYklkVklstggkl
++ l+ ++iP ++t+ sf ++l+ + Y++++ ++t+
ZK938.2 259 SIILP-----------FTIPEEAKTP-SFSTGLVNFGYFMEFGIVTKL-- 294
ltppllggel.lel.Pi<-*
+++p+++ ++ ++ P+
ZK938.2 295 IVQPRMRATIyVGEmPV 311