Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5c/seq/ZK945.2
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Query: ZK945.2 CE01733 locus:pas-7 proteasome component (A-type) status:Partially_confirmed SW:Q09583 protein_id:CAA88436.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
proteasome Proteasome A-type and B-type 204.6 1.5e-57 1
MotA_ExbB MotA/TolQ/ExbB proton channel family 5.6 3.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MotA_ExbB 1/1 159 198 .. 1 41 [. 5.6 3.1
proteasome 1/1 31 216 .. 1 194 [] 204.6 1.5e-57
Alignments of top-scoring domains:
MotA_ExbB: domain 1 of 1, from 159 to 198: score 5.6, E = 3.1
*->replsaieilallgfnsfarlglapyliergafkeslrlal<-*
++ a +++ +++++++++l++++ l++++ ke r+++
ZK945.2 159 EYKAWAVGKHRQAAKAEIEKLKIEE-LDVNQLVKEAARIIM 198
proteasome: domain 1 of 1, from 31 to 216: score 204.6, E = 1.5e-57
*->vngGTTilgirgkdgVViAaDkrvtlGskvlmkgsarKifklyddki
v +++T+++irgk+gVV++aDk+++ sk+++++ ++++f++ +d++
ZK945.2 31 VDNAGTMIAIRGKNGVVVVADKLIS--SKLYTDNANPRMFNV-NDNV 74
lcgfAGlaADartLaeyaraelelykltygepgpveqlvaraadkaqvet
++++AG ++D+++L++ya e++++ ++y+ep+p++++++++a +++++t
ZK945.2 75 GVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHT 124
lkswrrpygvslleagldekgkpqLysidpsGsvvepkdpatAiGgSGst
l+ +r p+g++ ++ + + ++++L++++psG +e+k a+A G++ ++
ZK945.2 125 LGISR-PFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYK--AWAVGKH-RQ 170
yAlsalealykkpnlteeeavelakkalkialdrdvysggnievaei<-*
+A++++e+l +++l++ ++v+ a++++++++d+++ ++++ie++++
ZK945.2 171 AAKAEIEKLK-IEELDVNQLVKEAARIIMVVRDENKDKNVQIEMGWV 216