Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5c/seq/ZK973.10
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Query: ZK973.10 CE23478 status:Partially_confirmed TR:Q9N4L8 protein_id:AAF40003.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ETC_CI_21 ETC complex I subunit conserved region 225.1 9.9e-64 1
HCO3_cotransp HCO3- transporter family 1.7 6.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HCO3_cotransp 1/1 170 183 .. 1 14 [. 1.7 6.3
ETC_CI_21 1/1 97 196 .. 1 112 [] 225.1 9.9e-64
Alignments of top-scoring domains:
HCO3_cotransp: domain 1 of 1, from 170 to 183: score 1.7, E = 6.3
*->dveeggerwgkPHV<-*
dvee+ er++kP++
ZK973.10 170 DVEEPHERKIKPKN 183
ETC_CI_21: domain 1 of 1, from 97 to 196: score 225.1, E = 9.9e-64
*->RkvrIYrPaknamQSGkantkkWkieFdrnreaRWENPLMGWtstgD
R++rI+rPa++++QS+++ntk+W+ie+d nr+ RWENPLMGW++t+D
ZK973.10 97 RTARIFRPARETTQSAWGNTKSWTIELD-NRQ-RWENPLMGWSGTAD 141
plsnvggveLtFetkEeAvafAerqgweYdveepkapkrkpKayadNadv
plsn +g++L+F+tkE+A+af+e+++we+dveep+++k+kpK+y++N
ZK973.10 142 PLSN-VGMDLKFATKEDAIAFCEKNRWEFDVEEPHERKIKPKNYGQN--- 187
ElraFswnrrtraev<-*
Fswnrrtr +
ZK973.10 188 ----FSWNRRTR--I 196