Usage of area map
In this page, a map in which location of cosmids and genes are depicted
locates on the left, and in-situ hybridization images locate on the right.
- map
In the map, the following objects are depicted.
- cosmid : red box
The location of each cosmid clone is depicted by a vertical red box.
- CDS : blue box
Predicted genes (CDSs) are depicted by vertical blue boxes. The exons are
drawn by boxes, and introns are drawn by vertical lines. Genes on direct
strand are drawn on the left side of the cosmid, and genes on complementary
strand are drawn on the right.
A red string on the CDS box shows CDS number. Black strings around the CDS
box show corresponding cDNA clone groups (CELKxxxxx).
- transcribed gene : green box
Genes identified by EST evidences are depicted by vertical green boxes.
The exons are drawn by boxes, and introns are drawn by vertical lines.
Genes on direct strand are drawn on the left side of the cosmid, and genes
on complementary strand are drawn on the right.
A red string on the gene box shows its name.
If you click one of the cosmid boxes, a precise information of the selected
cosmid (Cosmid map) is displayed. If you
click one of the CDS boxes, precise report of the selected gene is displayed.
- in-situ images
Thumbnail images of in-situ hybridization are aligned by genes (vertically) and
developmental stages (horizontally). By clicking a thumbnail, a full size
image can be seen.
- change view
There are buttons on both top and bottom of the area map page.
- : scroll up one unit
If the button is clicked, the view is scrolled to upper direction so that
a neighbor cosmid is included in the new view.
- : scroll up two units
If the button is clicked, the view is scrolled to upper direction so that
two neighbor cosmids are included in the new view.
- : scroll up three units
If the button is clicked, the view is scrolled to upper direction so that
three neighbor cosmids are included in the new view.
- : scroll down one unit
If the button is clicked, the view is scrolled to down direction so that
a neighbor cosmid is included in the new view.
- : scroll down two units
If the button is clicked, the view is scrolled to down direction so that
two neighbor cosmids are included in the new view.
- : scroll down three units
If the button is clicked, the view is scrolled to down direction so that
three neighbor cosmids are included in the new view.
- : zoom in
If the button is clicked, the center region of the current view is enlarged
and cosmids at both edges are excluded from the new view.
- : zoom out
If the button is clicked, the current view is reduced and the neighbor cosmids of both sides are included in the new view.
- change map size
Users can change the graphic size of the map. Type width and height
by dot number to fields on the bottom of the area map page, and then
click "go" button. This affects to map only, so that in-situ hybridization
images are unchanged.